Hi there - I'm not an expert with regard to scabious but do have a few in the garden. All are still in flower at the moment having started flowering a couple of months ago - I also have some grown from seed this spring which should start to flower next year.
I "deadhead" by removing spent flowers back to the base of the flower stem which is usually to the next shoot preparing to flower. I am going to leave some to self-seed for next year.
I don't intend to do anything with the leaves as the small scabious which I planted last summer did not loose its leaves over winter nor did the larger seedlings I grew during spring 2011.
I hope that this helps and am sure that others will have lots of suggestions/tips in due course.
Happy gardening 