As I understand it herbaceous perennials will not,be affected. Woody shrubs of many kinds are susceptible to honey fungus. Can you take out the roots completely? Evergreen perennials like hellebores are ok too I think so you could still make an attractive border. I have planted an area where a large viburnum and. Eleagnus were cut down. I intended just planting for colour, etc in this area when I cut these shrubs and then to remove them the following autumn. However, I have cannas, echinaceas, dahlias, hellebores, pinks, Heucheras, clematis, etc., as well as various bulbs growing well and the stumps, 3 years later, breaking up fast to the extent that they are not now noticeable or problematic